Expressing an association between two organisms
was attributed to: https://orcid.org/0000-0002-1267-0234
type: AssertionTemplate
description: Such a nanopublication expresses an association between two organism instances (subject and object), for example expressing that one subject individual ate the object individual. For expressing interactions or more general knowledge between classes of organisms (taxa), please use the alternative template "Associations between taxa".
has nanopub label pattern: Organism of ${subjtaxonname} - ${relation} - organism of ${objtaxonname}
has statement: st00
has statement: st05
has statement: st09
has statement: st10
has statement: st11
has statement: st12
has statement: st20
has statement: st25
has statement: st30
has statement: st39
has statement: st40
has statement: st41
has statement: st42
has statement: st50
has statement: st55
has statement: st60
has statement: st81
has statement: st82
has statement: st90
has tag: Biodiversity

sig
has algorithm: RSA

Template: Expressing an association between two organisms
created: 2023-08-18T08:04:22.022Z
creator: https://orcid.org/0000-0002-1267-0234
license: https://creativecommons.org/licenses/by/4.0/
supersedes: RA79AZMFRk s41PdOHWvH DIwCHWCb6SN-wYuBuoihkrU
type: Nanopublication
has assertion: Expressing an association between two organisms
has provenance: provenance
has publication info: pubinfo

this association
type: IntroducedResource
type: LocalResource

short explanation related to the above statement
type: LongLiteralPlaceholder

lat/long coordinates in format like '+47.37+8.54' or with altitude '+47.37+8.54+410.5'
type: LiteralPlaceholder
has regex: [+-][0-9]+(\.[0-9]+)?[+-][0-9]+(\.[0-9]+)?([+-][0-9]+(\.[0-9]+)?)?

the object organism
type: LocalResource

any existing URI identifier of organism (e.g. of digital collection specimen or observation in nature)
type: ExternalUriPlaceholder

select the life cycle stage of the object organism; leave blank if unknown
type: RestrictedChoicePlaceholder

occurrence URI from GBIF (https://www.gbif.org/occurrence/...) or iDigBio, BOLD, PlutoF, etc.
type: ExternalUriPlaceholder

the object taxon concept
type: LocalResource

taxon concept reference (https://doi.org/... or https://treatment.plazi.org/id/...)
type: ExternalUriPlaceholder
has regex: (https://doi.org/|https://treatment.plazi.org/id/).+

search and select from list (if not found, paste identifying URI from IPNI, MycoBank, Index Fungorum, or Zoobank)
type: GuidedChoicePlaceholder
possible values from api: https://vodex.petapico.org/nidx/query

the relation between the two organisms
type: RestrictedChoicePlaceholder

an association between two individual organisms

is an instance of

refers to the relation (between subject organism and object organism)

the subject organism
type: LocalResource

refers to - links an association to its subject

the subject taxon concept
type: LocalResource

search and select from list (if not found, paste identifying URI from IPNI, MycoBank, Index Fungorum, or Zoobank)
type: GuidedChoicePlaceholder
possible values from api: https://vodex.petapico.org/nidx/query

has the name - links a taxon usage to a taxon name

publication DOI (https://doi.org/...) or taxon treatment ID (https://treatment.plazi.org/id/...)
type: ExternalUriPlaceholder
has regex: (https://doi.org/|https://treatment.plazi.org/id/).+

is used as defined in

select the life cycle stage of the subject organism; leave blank if unknown
type: RestrictedChoicePlaceholder

has the life cycle stage

occurrence URI from GBIF (https://www.gbif.org/occurrence/...) or iDigBio, BOLD, PlutoF, etc.
type: ExternalUriPlaceholder

has the occurrence - links an organism to a record of a specific occurrence of it

any existing URI identifier of organism (e.g. of digital collection specimen or observation in nature)
type: ExternalUriPlaceholder

is the same as

refers to - links an association to its object

hasLocationCoordinates
label: has the location coordinates - points to the location coordinates associated with this relation or organisms (e.g. place of collection); if occurrence URI is given, this is redundant and does not need to be filled in

time expressed in XSD DateTime format, e.g. '2023-03-30T22:17:11Z'
type: LiteralPlaceholder
has regex: -?([1-9]\d\d\d+|0\d\d\d)-(0[1-9]|1[0-2])-(0[1-9]|[12]\d|3[01])T(([01]\d|2[0-3]):[0-5]\d:[0-5]\d(\.\d+)?|24:00:00(\.0+)?)(Z|[+-](0\d|1[0-4]):[0-5]\d)?

has the time stamp - points to the date and time associated with this relation or organisms (e.g. date of collection); if occurrence URI is given, this is redundant and does not need to be filled in

has the free-text comment