Template: Expressing an association between two organisms
has assertion: Expressing an association between two organisms
has provenance: provenance
has publication info: pubinfo
type: Nanopublication
created: 2023-08-23T10:29:39.355Z
creator: https://orcid.org/0000-0002-1267-0234
license: https://creativecommons.org/licenses/by/4.0/

Expressing an association between two organisms
description: Such a nanopublication expresses an association between two organism instances (subject and object), for example expressing that one subject individual ate the object individual. For expressing interactions or more general knowledge between classes of organisms (taxa), please use the alternative template "Associations between taxa".
type: AssertionTemplate
has nanopub label pattern: Organism of ${subjtaxonname} - ${relation} - organism of ${objtaxonname}
has statement: st00
has statement: st05
has statement: st09
has statement: st10
has statement: st11
has statement: st12
has statement: st20
has statement: st25
has statement: st30
has statement: st39
has statement: st40
has statement: st41
has statement: st42
has statement: st50
has statement: st55
has statement: st60
has statement: st81
has statement: st82
has statement: st90
has tag: Biodiversity
has target nanopub type: BiodivNanopub
was attributed to: https://orcid.org/0000-0002-1267-0234

this association
type: IntroducedResource
type: LocalResource

short explanation related to the above statement
type: LongLiteralPlaceholder

lat/long coordinates in format like '+47.37+8.54' or with altitude '+47.37+8.54+410.5'
type: LiteralPlaceholder
has regex: [+-][0-9]+(\.[0-9]+)?[+-][0-9]+(\.[0-9]+)?([+-][0-9]+(\.[0-9]+)?)?

the object organism
type: LocalResource

any existing URI identifier of organism (e.g. of digital collection specimen or observation in nature)
type: ExternalUriPlaceholder

select the life cycle stage of the object organism; leave blank if unknown
type: RestrictedChoicePlaceholder

occurrence URI from GBIF (https://www.gbif.org/occurrence/...) or iDigBio, BOLD, PlutoF, etc.
type: ExternalUriPlaceholder

the object taxon concept
type: LocalResource

taxon concept reference (https://doi.org/... or https://treatment.plazi.org/id/...)
type: ExternalUriPlaceholder
has regex: (https://doi.org/|https://treatment.plazi.org/id/).+

search and select from list (if not found, paste identifying URI from IPNI, MycoBank, Index Fungorum, or Zoobank)
type: GuidedChoicePlaceholder
possible values from api: https://vodex.petapico.org/nidx/query

the relation between the two organisms
type: RestrictedChoicePlaceholder

the subject organism
type: LocalResource

any existing URI identifier of organism (e.g. of digital collection specimen or observation in nature)
type: ExternalUriPlaceholder

select the life cycle stage of the subject organism; leave blank if unknown
type: RestrictedChoicePlaceholder

occurrence URI from GBIF (https://www.gbif.org/occurrence/...) or iDigBio, BOLD, PlutoF, etc.
type: ExternalUriPlaceholder

the subject taxon concept
type: LocalResource

publication DOI (https://doi.org/...) or taxon treatment ID (https://treatment.plazi.org/id/...)
type: ExternalUriPlaceholder
has regex: (https://doi.org/|https://treatment.plazi.org/id/).+

search and select from list (if not found, paste identifying URI from IPNI, MycoBank, Index Fungorum, or Zoobank)
type: GuidedChoicePlaceholder
possible values from api: https://vodex.petapico.org/nidx/query

time expressed in XSD DateTime format, e.g. '2023-03-30T22:17:11Z'
type: LiteralPlaceholder
has regex: -?([1-9]\d\d\d+|0\d\d\d)-(0[1-9]|1[0-2])-(0[1-9]|[12]\d|3[01])T(([01]\d|2[0-3]):[0-5]\d:[0-5]\d(\.\d+)?|24:00:00(\.0+)?)(Z|[+-](0\d|1[0-4]):[0-5]\d)?

is an instance of

has the free-text comment

is the same as

an association between two individual organisms

refers to - links an association to its object

refers to the relation (between subject organism and object organism)

refers to - links an association to its subject

has the time stamp - points to the date and time associated with this relation or organisms (e.g. date of collection); if occurrence URI is given, this is redundant and does not need to be filled in

has the life cycle stage

hasLocationCoordinates
label: has the location coordinates - points to the location coordinates associated with this relation or organisms (e.g. place of collection); if occurrence URI is given, this is redundant and does not need to be filled in

has the occurrence - links an organism to a record of a specific occurrence of it

is used as defined in

has the name - links a taxon usage to a taxon name

sig
has algorithm: RSA