Knowledge Pixels Incubator #4: FAIRification of mass spectrometry workflows using FDOs

๐Ÿ“Œ Relevant resources

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  • FAIR Digital Twins of COVID Spike variants ยท The MAC FDT demonstration is complete and fully version-controlled all live on the nanopub network : 3 FDTs for COVID Spike protein variants are realized using nanopub-based FDOs representing 45 vocabulary terms + 11 templates --> 38 instances โ†—๏ธŽsource

MAC FDT โ€” Alpha variant digital twin

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obs type label
Alpha AgMata = 0.7004717948717948 โ€” Bio2Byte
Alpha pLDDT = 23.673561732385306 โ€” ESM2
Alpha pLDDT = 93.74392833444035 โ€” AlphaFold 2
Alpha RMSD = 13.378861773140596 ร… โ€” ESM2
Alpha RMSD = 2.277628683231952 ร… โ€” AlphaFold 2
Alpha SASA = 10141.236988525969 ร…ยฒ โ€” AlphaFold 2
Alpha SASA = 16494.878394358453 ร…ยฒ โ€” ESM2
Alpha DMS observation โ€” Bloom Lab (bind=9.81374, expr=10.05266)
Alpha real-world occurrence โ€” England (late 2020-2021)
Alpha โ€” WHO Variant of Concern (2020-12-18)